PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015869952.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 511aa    MW: 57267.4 Da    PI: 8.4025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015869952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07383430448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
   XP_015869952.1 383 WTLTEVMNLVDGISEYGVGRWTDIKRLLFaasAYRTPIDLRDKWRNLL 430
                      ********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-10372434IPR009057Homeodomain-like
PROSITE profilePS5129413.093375434IPR017930Myb domain
SuperFamilySSF466892.42E-15377453IPR009057Homeodomain-like
SMARTSM007175.8E-7379432IPR001005SANT/Myb domain
CDDcd116602.88E-17381431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDREAHLRKK FSNAKSQRVK TDESLTPALE DETVEHLLAE PKNENVSVDG VLYFGEQNAG  60
KCLGIEDFSC EFEYGLNPYR GGLHSSTARE EEDDLALGVL DGLLDEVDEV EDLHATDGLA  120
SPCEDFLLDI DFAGKVSVLA PGLCQGSHSR NPSSESQSPG LSGSSNSAIG ISDSSTVTVQ  180
DFEYKNDSLN KTEKHGLQAA VRRKKRCRTP LQGTCLDSQD FKEFDDDENP LLSDLLLSNQ  240
KGKSSIEACK VGSFLREKRL RKPTQRYIEE FSNKKSKYLK GRGKFSSGDA VTANDKGLKM  300
RSHGDLHNVR PKTLSAVSEE ELLSGTKIQE VPLVRGKRGR PKKHVSVPQI EPDEEHFTSE  360
SEDDSVTKRR CKSHDRRKHQ RMWTLTEVMN LVDGISEYGV GRWTDIKRLL FAASAYRTPI  420
DLRDKWRNLL RASCAHKLKK KEMEERQGHA VRPLPKSLLR RVRELAKIHP YPRERGVKSI  480
GEDDPSTLPT SSKGAPLSVG RKNNVRRKNC T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869952.10.0PREDICTED: uncharacterized protein LOC107407213
TrEMBLW9S5270.0W9S527_9R
STRINGVIT_08s0040g01640.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-23TRF-like 6